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Expert Contributor
Posts: 66
Registered: ‎12-24-2015

org.xerial.snappy.SnappyError: [FAILED_TO_LOAD_NATIVE_LIBRARY

Getting below error as soon as submitting any command over spark-shell.

 

 

warning: there were 1 deprecation warning(s); re-run with -deprecation for details
[Stage 0:> (0 + 0) / 2]java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.xerial.snappy.SnappyLoader.loadNativeLibrary(SnappyLoader.java:312)
at org.xerial.snappy.SnappyLoader.load(SnappyLoader.java:219)
at org.xerial.snappy.Snappy.<clinit>(Snappy.java:44)
at org.apache.spark.io.SnappyCompressionCodec$.liftedTree1$1(CompressionCodec.scala:169)
at org.apache.spark.io.SnappyCompressionCodec$.org$apache$spark$io$SnappyCompressionCodec$$version$lzycompute(CompressionCodec.scala:168)
at org.apache.spark.io.SnappyCompressionCodec$.org$apache$spark$io$SnappyCompressionCodec$$version(CompressionCodec.scala:168)
at org.apache.spark.io.SnappyCompressionCodec.<init>(CompressionCodec.scala:152)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.io.CompressionCodec$.createCodec(CompressionCodec.scala:72)
at org.apache.spark.io.CompressionCodec$.createCodec(CompressionCodec.scala:65)
at org.apache.spark.broadcast.TorrentBroadcast.org$apache$spark$broadcast$TorrentBroadcast$$setConf(TorrentBroadcast.scala:74)
at org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:81)
at org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34)
at org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63)
at org.apache.spark.SparkContext.broadcast(SparkContext.scala:1334)
at org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1006)
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921)
at org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1611)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1603)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1592)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
Caused by: java.lang.UnsatisfiedLinkError: /tmp/snappy-1.0.4.1-libsnappyjava.so: /tmp/snappy-1.0.4.1-libsnappyjava.so: failed to map segment from shared object: Operation not permitted
at java.lang.ClassLoader$NativeLibrary.load(Native Method)
at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1965)
at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1890)
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1851)
at java.lang.Runtime.load0(Runtime.java:795)
at java.lang.System.load(System.java:1062)
at org.xerial.snappy.SnappyNativeLoader.load(SnappyNativeLoader.java:39)
... 29 more
org.apache.spark.SparkException: Job aborted due to stage failure: Task serialization failed: java.lang.reflect.InvocationTargetException
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
java.lang.reflect.Constructor.newInstance(Constructor.java:526)
org.apache.spark.io.CompressionCodec$.createCodec(CompressionCodec.scala:72)
org.apache.spark.io.CompressionCodec$.createCodec(CompressionCodec.scala:65)
org.apache.spark.broadcast.TorrentBroadcast.org$apache$spark$broadcast$TorrentBroadcast$$setConf(TorrentBroadcast.scala:74)
org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:81)
org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34)
org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63)
org.apache.spark.SparkContext.broadcast(SparkContext.scala:1334)
org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1006)
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921)
org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861)
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1611)
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1603)
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1592)
org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)

at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1433)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1421)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1420)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1420)
at org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1016)
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921)
at org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1611)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1603)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1592)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:620)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1862)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1875)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1888)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1959)
at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:927)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:111)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:316)
at org.apache.spark.rdd.RDD.collect(RDD.scala:926)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation$.mergeSchemasInParallel(ParquetRelation.scala:799)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation$MetadataCache.org$apache$spark$sql$execution$datasources$parquet$ParquetRelation$MetadataCache$$readSchema(ParquetRelation.scala:517)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation$MetadataCache$$anonfun$12.apply(ParquetRelation.scala:421)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation$MetadataCache$$anonfun$12.apply(ParquetRelation.scala:421)
at scala.Option.orElse(Option.scala:257)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation$MetadataCache.refresh(ParquetRelation.scala:421)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation.org$apache$spark$sql$execution$datasources$parquet$ParquetRelation$$metadataCache$lzycompute(ParquetRelation.scala:145)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation.org$apache$spark$sql$execution$datasources$parquet$ParquetRelation$$metadataCache(ParquetRelation.scala:143)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation$$anonfun$6.apply(ParquetRelation.scala:202)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation$$anonfun$6.apply(ParquetRelation.scala:202)
at scala.Option.getOrElse(Option.scala:120)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation.dataSchema(ParquetRelation.scala:202)
at org.apache.spark.sql.sources.HadoopFsRelation.schema$lzycompute(interfaces.scala:636)
at org.apache.spark.sql.sources.HadoopFsRelation.schema(interfaces.scala:635)
at org.apache.spark.sql.execution.datasources.LogicalRelation.<init>(LogicalRelation.scala:39)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:125)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:109)
at org.apache.spark.sql.SQLContext.load(SQLContext.scala:1126)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:25)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:30)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:32)
at $iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:34)
at $iwC$$iwC$$iwC$$iwC.<init>(<console>:36)
at $iwC$$iwC$$iwC.<init>(<console>:38)
at $iwC$$iwC.<init>(<console>:40)
at $iwC.<init>(<console>:42)
at <init>(<console>:44)
at .<init>(<console>:48)
at .<clinit>(<console>)
at .<init>(<console>:7)
at .<clinit>(<console>)
at $print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1045)
at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1326)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:821)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:852)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:800)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857)
at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814)
at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:657)
at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:665)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:670)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:997)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1064)
at org.apache.spark.repl.Main$.main(Main.scala:35)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:730)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.io.CompressionCodec$.createCodec(CompressionCodec.scala:72)
at org.apache.spark.io.CompressionCodec$.createCodec(CompressionCodec.scala:65)
at org.apache.spark.broadcast.TorrentBroadcast.org$apache$spark$broadcast$TorrentBroadcast$$setConf(TorrentBroadcast.scala:74)
at org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:81)
at org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34)
at org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63)
at org.apache.spark.SparkContext.broadcast(SparkContext.scala:1334)
at org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1006)
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921)
at org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1611)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1603)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1592)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
Caused by: java.lang.IllegalArgumentException: org.xerial.snappy.SnappyError: [FAILED_TO_LOAD_NATIVE_LIBRARY] null
at org.apache.spark.io.SnappyCompressionCodec$.liftedTree1$1(CompressionCodec.scala:171)
at org.apache.spark.io.SnappyCompressionCodec$.org$apache$spark$io$SnappyCompressionCodec$$version$lzycompute(CompressionCodec.scala:168)
at org.apache.spark.io.SnappyCompressionCodec$.org$apache$spark$io$SnappyCompressionCodec$$version(CompressionCodec.scala:168)
at org.apache.spark.io.SnappyCompressionCodec.<init>(CompressionCodec.scala:152)
... 18 more
Caused by: org.xerial.snappy.SnappyError: [FAILED_TO_LOAD_NATIVE_LIBRARY] null
at org.xerial.snappy.SnappyLoader.load(SnappyLoader.java:229)
at org.xerial.snappy.Snappy.<clinit>(Snappy.java:44)
at org.apache.spark.io.SnappyCompressionCodec$.liftedTree1$1(CompressionCodec.scala:169)
... 21 more


scala>

Expert Contributor
Posts: 66
Registered: ‎12-24-2015

Re: org.xerial.snappy.SnappyError: [FAILED_TO_LOAD_NATIVE_LIBRARY

Fixed after supplying temp path explicitly.
 pyspark --driver-java-options -Djava.io.tmpdir=/home/<user-home>/temp  –v


OR

 

spark-shell --driver-java-options -Djava.io.tmpdir=/home/<user-home>/temp  –v

Highlighted
Expert Contributor
Posts: 66
Registered: ‎12-24-2015

Re: org.xerial.snappy.SnappyError: [FAILED_TO_LOAD_NATIVE_LIBRARY

run the command ------> mount | grep /tmp

    /dev/mapper/xxx_tmp on /var/tmp type xfs (rw,nosuid,nodev,noexec,relatime,attr2,inode64,noquota)
    /dev/mapper/xxx_tmp on /tmp type xfs (rw,nosuid,nodev,relatime,attr2,inode64,noquota)

 

if you see noexec permission, remount with option.

    sudo mount -o remount,exec /tmp/

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