question unable to start the spark2-history in hdp 3.1using Ambari 2.7 and HDP 3.1 on Amzonlinux2 in Support Questions

unable to start the spark2-history in hdp 3.1using Ambari 2.7 and HDP 3.1 on Amzonlinux2

Muralikrishna — Thu, 24 Oct 2019 19:16:10 GMT

While starting the spark2history in amzon2 os hdp 3.1 i am getting the below error.

19/10/24 10:44:48 INFO FsHistoryProvider: History server ui acls disabled; users with admin permissions: ; groups with admin permissions
19/10/24 10:44:49 WARN DomainSocketFactory: The short-circuit local reads feature cannot be used because libhadoop cannot be loaded.
Exception in thread "main" java.lang.reflect.InvocationTargetException

at org.apache.spark.deploy.history.HistoryServer.main(HistoryServer.scala)
Caused by: java.lang.UnsatisfiedLinkError: Could not load library. Reasons: [no leveldbjni64-1.8 in java.library.path, no leveldbjni-1.8 in java.library.path, no leveldbjni in java.library.path, /tmp/libleveldbjni-64-1-539041147636939375.8: /tmp/libleveldbjni-64-1-539041147636939375.8: failed to map segment from shared object]
at org.fusesource.hawtjni.runtime.Library.doLoad(Library.java:182)
at org.fusesource.hawtjni.runtime.Library.load(Library.java:140)
at org.fusesource.leveldbjni.JniDBFactory.<clinit>(JniDBFactory.java:48)
at org.apache.spark.util.kvstore.LevelDB.<init>(LevelDB.jav

I tried by export the following vairables at run time and added in hadoop_env.sh as well no luck

xport HADOOP_HOME=/usr/hdp/3.1.4.0-315/hadoop
export PATH=$HADOOP_HOME/bin:$PATH
export HADOOP_COMMON_LIB_NATIVE_DIR=$HADOOP_HOME/lib/native
export HADOOP_CONF_DIR=$HADOOP_HOME/etc/hadoop
export HADOOP_HDFS_HOME=$HADOOP_HOME
export HADOOP_MAPRED_HOME=$HADOOP_HOME
export HADOOP_YARN_HOME=$HADOOP_HOME
export HADOOP_OPTS="$HADOOP_OPTS -Djava.library.path=$HADOOP_HOME/lib/native"
export JAVA_LIBRARY_PATH=$HADOOP_HOME/lib/native:$JAVA_LIBRARY_PATH
export JAVA_HOME=/usr/jdk64/jdk1.8.0_112
export JRE_HOME=/usr/jdk64/jdk1.8.0_112/jre
export PATH=${JAVA_HOME}/bin:${JRE_HOME}/bin:${PATH}:.

and also getting the following error while running the hadoop native lib check

[murali.kumpatla@hadoop02 spark2]$ hadoop checknative -a
19/10/24 14:01:19 DEBUG util.NativeCodeLoader: Trying to load the custom-built native-hadoop library...
19/10/24 14:01:19 DEBUG util.NativeCodeLoader: Loaded the native-hadoop library
19/10/24 14:01:20 INFO bzip2.Bzip2Factory: Successfully loaded & initialized native-bzip2 library system-native
19/10/24 14:01:20 INFO zlib.ZlibFactory: Successfully loaded & initialized native-zlib library
19/10/24 14:01:20 WARN zstd.ZStandardCompressor: Error loading zstandard native libraries: java.lang.InternalError: Cannot load libzstd.so.1 (libzstd.so.1: cannot open shared object file: No such file or directory)!
19/10/24 14:01:20 WARN erasurecode.ErasureCodeNative: Loading ISA-L failed: Failed to load libisal.so.2 (libisal.so.2: cannot open shared object file: No such file or directory)
19/10/24 14:01:20 WARN erasurecode.ErasureCodeNative: ISA-L support is not available in your platform... using builtin-java codec where applicable
19/10/24 14:01:20 DEBUG util.Shell: setsid exited with exit code 0
Native library checking:
hadoop: true /usr/hdp/3.1.4.0-315/hadoop/lib/native/libhadoop.so.1.0.0
zlib: true /lib64/libz.so.1
zstd : false
snappy: true /usr/hdp/3.1.4.0-315/hadoop/lib/native/libsnappy.so.1
lz4: true revision:10301
bzip2: true /lib64/libbz2.so.1
openssl: true /lib64/libcrypto.so
ISA-L: false Loading ISA-L failed: Failed to load libisal.so.2 (libisal.so.2: cannot open shared object file: No such file or directory)
19/10/24 14:01:20 DEBUG util.ExitUtil: Exiting with status 1: ExitException
1: ExitException
at org.apache.hadoop.util.ExitUtil.terminate(ExitUtil.java:304)
at org.apache.hadoop.util.ExitUtil.terminate(ExitUtil.java:292)
at org.apache.hadoop.util.NativeLibraryChecker.main(NativeLibraryChecker.java:160)
19/10/24 14:01:20 INFO util.ExitUtil: Exiting with status 1: ExitException
[murali.kumpatla@hadoop02 spark2]$

[murali.kumpatla@hadoop02 native]$ ldd libhadoop.so
linux-vdso.so.1 (0x00007ffe213fe000)
libdl.so.2 => /lib64/libdl.so.2 (0x00007fbcdc039000)
libjvm.so => not found
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fbcdbe1b000)
libc.so.6 => /lib64/libc.so.6 (0x00007fbcdba65000)
/lib64/ld-linux-x86-64.so.2 (0x00007fbcdc464000)
[murali.kumpatla@hadoop02 native]$

Java version as follows

[murali.kumpatla@hadoop02 bin]$ ./java -version
java version "1.8.0_112"
Java(TM) SE Runtime Environment (build 1.8.0_112-b15)
Java HotSpot(TM) 64-Bit Server VM (build 25.112-b15, mixed mode)
[murali.kumpatla@hadoop02 bin]$

Thanks in advance!

Re: unable to start the spark2-history in hdp 3.1using Ambari 2.7 and HDP 3.1 on Amzonlinux2

rguruvannagari — Thu, 24 Oct 2019 15:06:14 GMT

Make sure that /tmp is not mounted with noexec option on the host where spark2 history is failing.

#mount -v

#df -h /tmp

Re: unable to start the spark2-history in hdp 3.1using Ambari 2.7 and HDP 3.1 on Amzonlinux2

Muralikrishna — Thu, 24 Oct 2019 16:42:52 GMT

@rguruvannagari Thanks for the quick reply and i able to start the process based on your inputs.

While running the spark application i am getting the below issue, Help to fix the issue.

19/10/24 16:36:09 INFO ContextHandler: Started o.s.j.s.ServletContextHandler@4a0df195{/history,null,AVAILABLE,@Spark}
19/10/24 16:36:09 INFO HistoryServer: Bound HistoryServer to 0.0.0.0, and started at http://hadoop02.prod.phenom.local:18081
[murali.kumpatla@hadoop02 spark2]$ spark-shell
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
19/10/24 16:37:20 ERROR SparkContext: Error initializing SparkContext.
org.apache.spark.SparkException: Yarn application has already ended! It might have been killed or unable to launch application master.
at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.waitForApplication(YarnClientSchedulerBackend.scala:89)
at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.start(YarnClientSchedulerBackend.scala:63)
at org.apache.spark.scheduler.TaskSchedulerImpl.start(TaskSchedulerImpl.scala:164)
at org.apache.spark.SparkContext.<init>(SparkContext.scala:500)
at org.apache.spark.SparkContext$.getOrCreate(SparkContext.scala:2498)
at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:934)
at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:925)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.sql.SparkSession$Builder.getOrCreate(SparkSession.scala:925)
at org.apache.spark.repl.Main$.createSparkSession(Main.scala:103)
at $line3.$read$$iw$$iw.<init>(<console>:15)
at $line3.$read$$iw.<init>(<console>:43)
at $line3.$read.<init>(<console>:45)
at $line3.$read$.<init>(<console>:49)
at $line3.$read$.<clinit>(<console>)
at $line3.$eval$.$print$lzycompute(<console>:7)
at $line3.$eval$.$print(<console>:6)
at $line3.$eval.$print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:793)
at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1054)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:645)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:644)
at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31)
at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19)
at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:644)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:576)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:572)
at scala.tools.nsc.interpreter.IMain$$anonfun$quietRun$1.apply(IMain.scala:231)
at scala.tools.nsc.interpreter.IMain$$anonfun$quietRun$1.apply(IMain.scala:231)
at scala.tools.nsc.interpreter.IMain.beQuietDuring(IMain.scala:221)
at scala.tools.nsc.interpreter.IMain.quietRun(IMain.scala:231)
at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1$$anonfun$apply$mcV$sp$1.apply(SparkILoop.scala:88)
at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1$$anonfun$apply$mcV$sp$1.apply(SparkILoop.scala:88)
at scala.collection.immutable.List.foreach(List.scala:392)
at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply$mcV$sp(SparkILoop.scala:88)
at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply(SparkILoop.scala:88)
at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply(SparkILoop.scala:88)
at scala.tools.nsc.interpreter.ILoop.savingReplayStack(ILoop.scala:91)
at org.apache.spark.repl.SparkILoop.initializeSpark(SparkILoop.scala:87)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1$$anonfun$org$apache$spark$repl$SparkILoop$$anonfun$$loopPostInit$1$1.apply$mcV$sp(SparkILoop.scala:170)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1$$anonfun$org$apache$spark$repl$SparkILoop$$anonfun$$loopPostInit$1$1.apply(SparkILoop.scala:158)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1$$anonfun$org$apache$spark$repl$SparkILoop$$anonfun$$loopPostInit$1$1.apply(SparkILoop.scala:158)
at scala.tools.nsc.interpreter.ILoop$$anonfun$mumly$1.apply(ILoop.scala:189)
at scala.tools.nsc.interpreter.IMain.beQuietDuring(IMain.scala:221)
at scala.tools.nsc.interpreter.ILoop.mumly(ILoop.scala:186)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.org$apache$spark$repl$SparkILoop$$anonfun$$loopPostInit$1(SparkILoop.scala:158)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1$$anonfun$startup$1$1.apply(SparkILoop.scala:226)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1$$anonfun$startup$1$1.apply(SparkILoop.scala:206)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.withSuppressedSettings$1(SparkILoop.scala:194)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.startup$1(SparkILoop.scala:206)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply$mcZ$sp(SparkILoop.scala:241)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:141)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:141)
at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:141)
at org.apache.spark.repl.Main$.doMain(Main.scala:76)
at org.apache.spark.repl.Main$.main(Main.scala:56)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:904)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:198)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:228)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:137)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
19/10/24 16:37:20 WARN YarnSchedulerBackend$YarnSchedulerEndpoint: Attempted to request executors before the AM has registered!
19/10/24 16:37:20 WARN MetricsSystem: Stopping a MetricsSystem that is not running
org.apache.spark.SparkException: Yarn application has already ended! It might have been killed or unable to launch application master.
at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.waitForApplication(YarnClientSchedulerBackend.scala:89)
at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.start(YarnClientSchedulerBackend.scala:63)
at org.apache.spark.scheduler.TaskSchedulerImpl.start(TaskSchedulerImpl.scala:164)
at org.apache.spark.SparkContext.<init>(SparkContext.scala:500)
at org.apache.spark.SparkContext$.getOrCreate(SparkContext.scala:2498)
at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:934)
at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:925)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.sql.SparkSession$Builder.getOrCreate(SparkSession.scala:925)
at org.apache.spark.repl.Main$.createSparkSession(Main.scala:103)
... 62 elided
<console>:14: error: not found: value spark
import spark.implicits._
^
<console>:14: error: not found: value spark
import spark.sql
^
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