question Re: Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR) in Archives of Support Questions (Read Only)

Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR)

mail2jhamb — Thu, 22 Sep 2016 13:17:26 GMT

I am getting LeaseExpiredException in hadoop cluster -

tail -f /var/log/hadoop-hdfs/hadoop-hdfs-namenode-ip-172-30-2-148.log

	> 2016-09-21 11:54:14,533 INFO BlockStateChange (IPC Server handler 10
> on 8020): BLOCK* InvalidateBlocks: add blk_1073747501_6677 to
> 172.30.2.189:50010 2016-09-21 11:54:14,534 INFO org.apache.hadoop.ipc.Server (IPC Server handler 31 on 8020): IPC
> Server handler 31 on 8020, call
> org.apache.hadoop.hdfs.protocol.ClientProtocol.complete from
> 172.30.2.189:37674 Call#34 Retry#0: org.apache.hadoop.hdfs.server.namenode.LeaseExpiredException: No lease
> on
> /tmp/hive/hadoop/_tez_session_dir/1e4f71f0-9f29-468d-980e-9f19690bf849/.tez/application_1474442135017_0114/recovery/1/summary
> (inode 26350): File does not exist. Holder
> DFSClient_NONMAPREDUCE_-143782605_1 does not have any open files.
> 2016-09-21 11:54:15,557 INFO org.apache.hadoop.hdfs.StateChange (IPC
> Server handler 0 on 8020): BLOCK* allocate
> blk_1073747503_6679{UCState=UNDER_CONSTRUCTION, truncateBlock=null,
> primaryNodeIndex=-1,
> replicas=[ReplicaUC[[DISK]DS-86592ba7-c51a-431d-8019-9e362d721b28:NORMAL:172.30.2.189:50010|RBW]]} for
> /var/log/hadoop-yarn/apps/hadoop/logs/application_1474442135017_0114/ip-172-30-2-122.us-west-2.compute.internal_8041.tmp

And, some of the hive query is also failing. I am guessing, it is because of above issue.

tail -f /var/log/hive/hive-server2.log

    2016-09-21T11:59:35,126 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: ql.Driver (Driver.java:execute(1477)) - Executing command(queryId=hive_20160921115934_c56d9c91-640b-4f5d-b490-34549a4258c7): 
    INSERT INTO TABLE validation_logs 
    SELECT 
    "18364", 
    "TABLE_VALIDATION",
    error.code,
    error.validator,
    get_json_object(key, '$.table_name'),
    NULL,
    NULL,
    error.failure_msg,
    FROM_UNIXTIME(UNIX_TIMESTAMP('20160921','yyyyMMdd')), 
    from_unixtime(unix_timestamp())
    FROM
    (SELECT 
    MAP(concat("{\"table_name\" : \"", table_name , "\"}"), error) AS err_map
    FROM table_level_validation_result
    ) AS res
    LATERAL VIEW EXPLODE(res.err_map) tmp AS key, error WHERE error IS NOT NULL AND (error.code="error" OR error.code="warn")
    2016-09-21T11:59:35,126 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: ql.Driver (SessionState.java:printInfo(1054)) - Query ID = hive_20160921115934_c56d9c91-640b-4f5d-b490-34549a4258c7
    2016-09-21T11:59:35,126 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: ql.Driver (SessionState.java:printInfo(1054)) - Total jobs = 1
    2016-09-21T11:59:35,127 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: ql.Driver (SessionState.java:printInfo(1054)) - Launching Job 1 out of 1
    2016-09-21T11:59:35,127 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: ql.Driver (Driver.java:launchTask(1856)) - Starting task [Stage-1:MAPRED] in serial mode
    2016-09-21T11:59:35,127 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: tez.TezSessionPoolManager (TezSessionPoolManager.java:canWorkWithSameSession(404)) - The current user: hadoop, session user: hadoop
    2016-09-21T11:59:35,127 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: tez.TezSessionPoolManager (TezSessionPoolManager.java:canWorkWithSameSession(421)) - Current queue name is null incoming queue name is null
    2016-09-21T11:59:35,173 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: ql.Context (Context.java:getMRScratchDir(340)) - New scratch dir is hdfs://ip-172-30-2-148.us-west-2.compute.internal:8020/tmp/hive/hadoop/65cf7f02-a7d3-40ba-a93f-ff5214afbdfc/hive_2016-09-21_11-59-34_474_5003281239065359634-127
    2016-09-21T11:59:35,174 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: exec.Task (TezTask.java:updateSession(279)) - Session is already open
    2016-09-21T11:59:35,175 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: tez.DagUtils (DagUtils.java:createLocalResource(758)) - Resource modification time: 1474459142291 for hdfs://ip-172-30-2-148.us-west-2.compute.internal:8020/tmp/hive/hadoop/_tez_session_dir/85d36c12-c629-44a8-b23c-c628898a79b7/commons-vfs2-2.0.jar
    2016-09-21T11:59:35,176 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: tez.DagUtils (DagUtils.java:createLocalResource(758)) - Resource modification time: 1474459142320 for hdfs://ip-172-30-2-148.us-west-2.compute.internal:8020/tmp/hive/hadoop/_tez_session_dir/85d36c12-c629-44a8-b23c-c628898a79b7/emr-ddb-hive.jar
    2016-09-21T11:59:35,177 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: tez.DagUtils (DagUtils.java:createLocalResource(758)) - Resource modification time: 1474459142353 for hdfs://ip-172-30-2-148.us-west-2.compute.internal:8020/tmp/hive/hadoop/_tez_session_dir/85d36c12-c629-44a8-b23c-c628898a79b7/emr-hive-goodies.jar
    2016-09-21T11:59:35,178 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: tez.DagUtils (DagUtils.java:createLocalResource(758)) - Resource modification time: 1474459142389 for hdfs://ip-172-30-2-148.us-west-2.compute.internal:8020/tmp/hive/hadoop/_tez_session_dir/85d36c12-c629-44a8-b23c-c628898a79b7/emr-kinesis-hive.jar
    2016-09-21T11:59:35,178 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: tez.DagUtils (DagUtils.java:createLocalResource(758)) - Resource modification time: 1474459142423 for hdfs://ip-172-30-2-148.us-west-2.compute.internal:8020/tmp/hive/hadoop/_tez_session_dir/85d36c12-c629-44a8-b23c-c628898a79b7/hive-contrib-2.1.0-amzn-0.jar
    2016-09-21T11:59:35,179 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: tez.DagUtils (DagUtils.java:createLocalResource(758)) - Resource modification time: 1474459142496 for hdfs://ip-172-30-2-148.us-west-2.compute.internal:8020/tmp/hive/hadoop/_tez_session_dir/85d36c12-c629-44a8-b23c-c628898a79b7/hive-plugins-0.0.1-emr-upgrade-20160919.070538-1.jar
    2016-09-21T11:59:35,179 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: exec.Task (TezTask.java:build(321)) - Dag name: INSERT INTO TABLE valid...error.code="warn")(Stage-1)
    2016-09-21T11:59:35,180 INFO  [HiveServer2-Background-Pool: Thread-3883([])]: ql.Context (Context.java:getMRScratchDir(340)) - New scratch dir is hdfs://ip-172-30-2-148.us-west-2.compute.internal:8020/tmp/hive/hadoop/65cf7f02-a7d3-40ba-a93f-ff5214afbdfc/hive_2016-09-21_11-59-34_474_5003281239065359634-127
    2016-09-21T11:59:35,223 INFO  [HiveServer2-Background-Pool: Thread-3881([])]: impl.YarnClientImpl (YarnClientImpl.java:submitApplication(273)) - Submitted application application_1474442135017_0147
    2016-09-21T11:59:35,224 INFO  [HiveServer2-Background-Pool: Thread-3881([])]: client.TezClient (TezClient.java:start(477)) - The url to track the Tez Session: http://ip-172-30-2-148.us-west-2.compute.internal:20888/proxy/application_1474442135017_0147/
    2016-09-21T11:59:35,391 INFO  [HiveServer2-Background-Pool: Thread-3429([])]: SessionState (SessionState.java:printInfo(1054)) - Map 1: 0(+0,-4)/1
    2016-09-21T11:59:35,446 ERROR [HiveServer2-Background-Pool: Thread-3429([])]: SessionState (SessionState.java:printError(1063)) - Status: Failed
    2016-09-21T11:59:35,447 ERROR [HiveServer2-Background-Pool: Thread-3429([])]: SessionState (SessionState.java:printError(1063)) - Vertex failed, vertexName=Map 1, vertexId=vertex_1474442135017_0134_2_00, diagnostics=[Task failed, taskId=task_1474442135017_0134_2_00_000000, diagnostics=[TaskAttempt 0 failed, info=[Error: Error while running task ( failure ) : attempt_1474442135017_0134_2_00_000000_0:java.lang.RuntimeException: java.lang.RuntimeException: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:198)
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:160)
    at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
    at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
    at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
    at java.security.AccessController.doPrivileged(Native Method)
    at javax.security.auth.Subject.doAs(Subject.java:422)
    at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
    at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
    at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
    at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
    Caused by: java.lang.RuntimeException: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.initNextRecordReader(TezGroupedSplitsInputFormat.java:206)
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.next(TezGroupedSplitsInputFormat.java:152)
    at org.apache.tez.mapreduce.lib.MRReaderMapred.next(MRReaderMapred.java:116)
    at org.apache.hadoop.hive.ql.exec.tez.MapRecordSource.pushRecord(MapRecordSource.java:62)
    at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.run(MapRecordProcessor.java:360)
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:172)
    ... 14 more
    Caused by: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.hive.io.HiveIOExceptionHandlerChain.handleRecordReaderCreationException(HiveIOExceptionHandlerChain.java:97)
    at org.apache.hadoop.hive.io.HiveIOExceptionHandlerUtil.handleRecordReaderCreationException(HiveIOExceptionHandlerUtil.java:57)
    at org.apache.hadoop.hive.ql.io.HiveInputFormat.getRecordReader(HiveInputFormat.java:299)
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.initNextRecordReader(TezGroupedSplitsInputFormat.java:203)
    ... 19 more
    Caused by: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.getFileStatus(S3NativeFileSystem.java:818)
    at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.open(S3NativeFileSystem.java:1193)
    at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:771)
    at com.amazon.ws.emr.hadoop.fs.EmrFileSystem.open(EmrFileSystem.java:168)
    at org.apache.hadoop.mapred.LineRecordReader.<init>(LineRecordReader.java:109)
    at org.apache.hadoop.mapred.TextInputFormat.getRecordReader(TextInputFormat.java:67)
    at org.apache.hadoop.hive.ql.io.HiveInputFormat.getRecordReader(HiveInputFormat.java:297)
    ... 20 more
    ], TaskAttempt 1 failed, info=[Error: Error while running task ( failure ) : attempt_1474442135017_0134_2_00_000000_1:java.lang.RuntimeException: java.lang.RuntimeException: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:198)
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:160)
    at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
    at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
    at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
    at java.security.AccessController.doPrivileged(Native Method)
    at javax.security.auth.Subject.doAs(Subject.java:422)
    at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
    at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
    at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
    at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
    Caused by: java.lang.RuntimeException: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.initNextRecordReader(TezGroupedSplitsInputFormat.java:206)
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.next(TezGroupedSplitsInputFormat.java:152)
    at org.apache.tez.mapreduce.lib.MRReaderMapred.next(MRReaderMapred.java:116)
    at org.apache.hadoop.hive.ql.exec.tez.MapRecordSource.pushRecord(MapRecordSource.java:62)
    at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.run(MapRecordProcessor.java:360)
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:172)
    ... 14 more
    Caused by: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.hive.io.HiveIOExceptionHandlerChain.handleRecordReaderCreationException(HiveIOExceptionHandlerChain.java:97)
    at org.apache.hadoop.hive.io.HiveIOExceptionHandlerUtil.handleRecordReaderCreationException(HiveIOExceptionHandlerUtil.java:57)
    at org.apache.hadoop.hive.ql.io.HiveInputFormat.getRecordReader(HiveInputFormat.java:299)
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.initNextRecordReader(TezGroupedSplitsInputFormat.java:203)
    ... 19 more
    Caused by: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.getFileStatus(S3NativeFileSystem.java:818)
    at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.open(S3NativeFileSystem.java:1193)
    at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:771)
    at com.amazon.ws.emr.hadoop.fs.EmrFileSystem.open(EmrFileSystem.java:168)
    at org.apache.hadoop.mapred.LineRecordReader.<init>(LineRecordReader.java:109)
    at org.apache.hadoop.mapred.TextInputFormat.getRecordReader(TextInputFormat.java:67)
    at org.apache.hadoop.hive.ql.io.HiveInputFormat.getRecordReader(HiveInputFormat.java:297)
    ... 20 more
    ], TaskAttempt 2 failed, info=[Error: Error while running task ( failure ) : attempt_1474442135017_0134_2_00_000000_2:java.lang.RuntimeException: java.lang.RuntimeException: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:198)
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:160)
    at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
    at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
    at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
    at java.security.AccessController.doPrivileged(Native Method)
    at javax.security.auth.Subject.doAs(Subject.java:422)
    at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
    at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
    at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
    at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
    Caused by: java.lang.RuntimeException: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.initNextRecordReader(TezGroupedSplitsInputFormat.java:206)
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.next(TezGroupedSplitsInputFormat.java:152)
    at org.apache.tez.mapreduce.lib.MRReaderMapred.next(MRReaderMapred.java:116)
    at org.apache.hadoop.hive.ql.exec.tez.MapRecordSource.pushRecord(MapRecordSource.java:62)
    at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.run(MapRecordProcessor.java:360)
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:172)
    ... 14 more
    Caused by: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.hive.io.HiveIOExceptionHandlerChain.handleRecordReaderCreationException(HiveIOExceptionHandlerChain.java:97)
    at org.apache.hadoop.hive.io.HiveIOExceptionHandlerUtil.handleRecordReaderCreationException(HiveIOExceptionHandlerUtil.java:57)
    at org.apache.hadoop.hive.ql.io.HiveInputFormat.getRecordReader(HiveInputFormat.java:299)
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.initNextRecordReader(TezGroupedSplitsInputFormat.java:203)
    ... 19 more
    Caused by: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.getFileStatus(S3NativeFileSystem.java:818)
    at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.open(S3NativeFileSystem.java:1193)
    at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:771)
    at com.amazon.ws.emr.hadoop.fs.EmrFileSystem.open(EmrFileSystem.java:168)
    at org.apache.hadoop.mapred.LineRecordReader.<init>(LineRecordReader.java:109)
    at org.apache.hadoop.mapred.TextInputFormat.getRecordReader(TextInputFormat.java:67)
    at org.apache.hadoop.hive.ql.io.HiveInputFormat.getRecordReader(HiveInputFormat.java:297)
    ... 20 more
    ], TaskAttempt 3 failed, info=[Error: Error while running task ( failure ) : attempt_1474442135017_0134_2_00_000000_3:java.lang.RuntimeException: java.lang.RuntimeException: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:198)
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:160)
    at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
    at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
    at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
    at java.security.AccessController.doPrivileged(Native Method)
    at javax.security.auth.Subject.doAs(Subject.java:422)
    at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
    at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
    at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
    at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
    Caused by: java.lang.RuntimeException: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.initNextRecordReader(TezGroupedSplitsInputFormat.java:206)
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.next(TezGroupedSplitsInputFormat.java:152)
    at org.apache.tez.mapreduce.lib.MRReaderMapred.next(MRReaderMapred.java:116)
    at org.apache.hadoop.hive.ql.exec.tez.MapRecordSource.pushRecord(MapRecordSource.java:62)
    at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.run(MapRecordProcessor.java:360)
    at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:172)
    ... 14 more
    Caused by: java.io.IOException: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at org.apache.hadoop.hive.io.HiveIOExceptionHandlerChain.handleRecordReaderCreationException(HiveIOExceptionHandlerChain.java:97)
    at org.apache.hadoop.hive.io.HiveIOExceptionHandlerUtil.handleRecordReaderCreationException(HiveIOExceptionHandlerUtil.java:57)
    at org.apache.hadoop.hive.ql.io.HiveInputFormat.getRecordReader(HiveInputFormat.java:299)
    at org.apache.hadoop.mapred.split.TezGroupedSplitsInputFormat$TezGroupedSplitsRecordReader.initNextRecordReader(TezGroupedSplitsInputFormat.java:203)
    ... 19 more
    Caused by: java.io.FileNotFoundException: No such file or directory 's3://data-platform-insights/data-platform/internal_test_automation/2016/09/21/18364/logs/validations/table_col_aggregate_validation_result/.hive-staging_hive_2016-09-21_11-57-58_703_5106478639780932144-1/_tmp.-ext-10000/000000_0.gz'
    at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.getFileStatus(S3NativeFileSystem.java:818)
    at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.open(S3NativeFileSystem.java:1193)
    at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:771)
    at com.amazon.ws.emr.hadoop.fs.EmrFileSystem.open(EmrFileSystem.java:168)
    at org.apache.hadoop.mapred.LineRecordReader.<init>(LineRecordReader.java:109)
    at org.apache.hadoop.mapred.TextInputFormat.getRecordReader(TextInputFormat.java:67)
    at org.apache.hadoop.hive.ql.io.HiveInputFormat.getRecordReader(HiveInputFormat.java:297)
    ... 20 more
    ]], Vertex did not succeed due to OWN_TASK_FAILURE, failedTasks:1 killedTasks:0, Vertex vertex_1474442135017_0134_2_00 [Map 1] killed/failed due to:OWN_TASK_FAILURE]
    2016-09-21T11:59:35,447 ERROR [HiveServer2-Background-Pool: Thread-3429([])]: SessionState (SessionState.java:printError(1063)) - DAG did not succeed due to VERTEX_FAILURE. failedVertices:1 killedVertices:0

Also set hive configuration properties before executing the query -

    set hive.mapjoin.smalltable.filesize = 2000000000
    set mapreduce.map.speculative = false
    set mapreduce.output.fileoutputformat.compress = true
    set hive.exec.compress.output = true
    set mapreduce.task.timeout = 6000000
    set hive.optimize.bucketmapjoin.sortedmerge = true
    set io.compression.codecs = org.apache.hadoop.io.compress.GzipCodec
    set hive.auto.convert.sortmerge.join.noconditionaltask = false
    set hive.optimize.bucketmapjoin = true
    set hive.exec.compress.intermediate = true
    set hive.enforce.bucketmapjoin = true
    set mapred.output.compress = true
    set mapreduce.map.output.compress = true
    set hive.auto.convert.sortmerge.join = false
    set hive.auto.convert.join = false
    set mapreduce.reduce.speculative = false
    set mapred.output.compression.codec = org.apache.hadoop.io.compress.GzipCodec
    set hive.cache.expr.evaluation=false
    set mapred.output.compress=true
    set hive.exec.compress.output=true
    set mapred.output.compression.codec=org.apache.hadoop.io.compress.GzipCodec
    set io.compression.codecs=org.apache.hadoop.io.compress.GzipCodec
    set hive.exec.compress.intermediate=true
    set mapreduce.map.output.compress=true
    set hive.auto.convert.join=false
    set mapreduce.map.speculative=false
    set mapreduce.reduce.speculative=false

Cluster details-

1. one Data-node with 32 GB disk space.
2. Hive - 2.1.0, execution engine - tez 0.8.3
3. hadoop - 2.7.2

Questions-

1. Why it is throwing LeaseExpiredException ?
2. IS Hive query failure related to LeaseExpiredException ?
3. Is it because of wrong hive configuration properties ?

Update-1

As per this answer - http://stackoverflow.com/questions/26842933/leaseexpiredexception-no-lease-error-on-hdfs-failed-to-close-file, 
I added 
    SET hive.exec.max.dynamic.partitions=100000; 
    SET hive.exec.max.dynamic.partitions.pernode=100000;
But then also showing the same exception.

Re: Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR)

sunile_manjee — Fri, 23 Sep 2016 08:59:32 GMT

@Hitesh Jamb Are you getting this error (namenode) during MR job?

Re: Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR)

mail2jhamb — Fri, 23 Sep 2016 10:15:56 GMT

@SunileManjee That also I am unaware of. In my application there is no Mapreduce code. Only, we are using is Hive. Previously, execution engine was mr, now I upgraded to tez. Previously, it was working fine. And, hive internally divides tasks between multiple mappers, and reducers. May be, that is causing problem.

As per hive-default.xml, hive.exec.stagingdir = .hive-staging. This property is not present in earlier version.

Re: Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR)

sunile_manjee — Sat, 24 Sep 2016 03:51:13 GMT

@Hitesh Jamb I hit this issue on my sandbox. what is your default for max dynamic partitions on hive? I did the following and it fixed my issues

SET hive.exec.max.dynamic.partitions=100000; 
SET hive.exec.max.dynamic.partitions.pernode=100000;

Re: Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR)

sunile_manjee — Tue, 27 Sep 2016 12:00:43 GMT

@Hitesh Jamb any update?

Re: Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR)

mail2jhamb — Tue, 27 Sep 2016 12:52:19 GMT

@Sunile Manjee This configuration didn't work. I found the issue of this problem. And, it lies in application layer code only. I will update the answer.

Re: Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR)

mail2jhamb — Tue, 27 Sep 2016 12:53:14 GMT

I resolved the issue. Let me explain in detail.

Exceptions that is coming -

LeaveExpirtedException - from HDFS side.
FileNotFoundException - from Hive side (when Tez execution engine executes DAG)

Problem scenario-

We just upgraded the hive version from 0.13.0 to 2.1.0. And, everything was working fine with previous version. Zero runtime exception.

Different thoughts to resolve the issue -

First thought was, two threads was working on same piece because of NN intelligence. But as per below settings
set mapreduce.map.speculative=false set mapreduce.reduce.speculative=false

that was not possible.

then, I increase the count from 1000 to 100000 for below settings -
SET hive.exec.max.dynamic.partitions=100000; SET hive.exec.max.dynamic.partitions.pernode=100000;

that also didn't work.

Then the third thought was, definitely in a same process, what mapper-1 was created was deleted by another mapper/reducer. But, we didn't found any such logs in Hveserver2, Tez logs.
Finally the root cause lies in a application layer code itself. In hive-exec-2.1.0 version, they introduced new configuration property
"hive.exec.stagingdir":".hive-staging"

Description of above property -

Directory name that will be created inside table locations in order to support HDFS encryption. This is replaces ${hive.exec.scratchdir} for query results with the exception of read-only tables. In all cases ${hive.exec.scratchdir} is still used for other temporary files, such as job plans.

So if there is any concurrent jobs in Application layer code (ETL), and are doing operation(rename/delete/move) on same table, then it may lead to this problem.

And, in our case, 2 concurrent jobs are doing "INSERT OVERWRITE" on same table, that leads to delete metadata file of 1 mapper, that is causing this issue.

Resolution -

Move the metadata file location to outside table(table lies in S3).
Disable HDFS encryption (as mentioned in Description of stagingdir property.)
Change into your Application layer code to avoid concurrency issue.

Re: Why hdfs throwing LeaseExpiredException in Hadoop cluster (AWS EMR)

mail2jhamb — Tue, 27 Sep 2016 12:53:41 GMT

@Sunile Manjee Updated the answer.