All nodes we have lzo installed, and lzo is configured properly. Spark and mr jobs are running fine. But we are seeing exception while running spark job using java-action through oozie.
As it is not able to load hadoop-native lib, verified it is present in spark-default.conf. Even in jobs we are not using lzo compression, not sure why it is picking lzo?
spark.driver.extraLibraryPath=/usr/hdp/current/hadoop-client/lib/native:/usr/hdp/current/hadoop-client/lib/native/Linux-amd64-64
spark.executor.extraLibraryPath=/usr/hdp/current/hadoop-client/lib/native:/usr/hdp/current/hadoop-client/lib/native/Linux-amd64-64
Below is the exception in yarn application logs
ERROR lzo.GPLNativeCodeLoader: Could not load native gpl library
java.lang.UnsatisfiedLinkError: no gplcompression in java.library.path
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1867)
at java.lang.Runtime.loadLibrary0(Runtime.java:870)
at java.lang.System.loadLibrary(System.java:1122)
at com.hadoop.compression.lzo.GPLNativeCodeLoader.<clinit>(GPLNativeCodeLoader.java:32)
at com.hadoop.compression.lzo.LzoCodec.<clinit>(LzoCodec.java:71)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:2147)
at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2112)
at org.apache.hadoop.io.compress.CompressionCodecFactory.getCodecClasses(CompressionCodecFactory.java:132)
at org.apache.hadoop.io.compress.CompressionCodecFactory.<init>(CompressionCodecFactory.java:179)
at org.apache.hadoop.mapred.TextInputFormat.configure(TextInputFormat.java:45)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:78)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136)
at org.apache.spark.rdd.HadoopRDD.getInputFormat(HadoopRDD.scala:185)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:234)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:208)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:101)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
at org.apache.spark.CacheManager.getOrCompute(CacheManager.scala:69)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:275)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:227)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
ERROR lzo.LzoCodec: Cannot load native-lzo without native-hadoop
