@darouwan,
You should not need to do any changes to your MySQL system tables.
You may be doing damage to your MySQL installation!
This Tables have unsupported engine type" message appears because the Cloudera Manager database has tables in it that are not InnoDB.
To check your Cloudera Manager tables, you can connecdt to your MySQL server using the /etc/cloudera-scm-server/db.properties configuration as a guide. Then, run the following query:
SELECT TABLE_NAME, ENGINE FROM INFORMATION_SCHEMA.TABLES WHERE TABLE_SCHEMA = DATABASE();
If you haven't used Cloudera Manager yet, you can drop the tables and then start Cloudera Manager. If your MySQL instance supports InnoDB, new tables will be created with InnoDB as the type.
Let us know if you have any questions.
Regards,
Ben