Azure does not support IPv6. Docker containers inherit the host's network AFAIK. So, you don't have to disable IPv6. Here is Azure FAQ for your reference. Does Azure support IPv6?
Microsoft has played a leading role in helping customers to smoothly transition from IPv4 to IPv6 for the past several years. To date, Microsoft has built IPv6 support into many of its products and solutions like Windows 8 and Windows Server 2012 R2. Microsoft is committed to expanding the worldwide capabilities of the Internet through IPv6 and enabling a variety of valuable and exciting scenarios, including peer-to-peer and mobile applications. The foundational work to enable IPv6 in the Azure environment is well underway. However, we are unable to share a date when IPv6 support will be generally available at this time. For more information on IPv6 technologies and IPv6 support available in the Windows operating system today, see Microsoft’s IPv6 information site which includes business, technical, and developer resources: http://technet.microsoft.com/en-us/network/bb530961
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