Hi,
I have a strange issue with Ambari 2.6.1.0 on HDP 2.6.4.0. When I stop Metrics Collector, delete all files in /var/lib/ambari-metrics-collector and start Metrics Collector again, new checkpoint, hbase and hbase-tmp dirs are re-created. Metrics Collector shows graphs and everything seems to be alright for a couple of minutes. But then Metrics Collector crashed and I see those outputs:
ambari-metrics-collector.log :
java.lang.InterruptedException
at java.lang.Object.wait(Native Method)
at java.lang.Object.wait(Object.java:502)
at org.apache.helix.controller.stages.ClusterEventBlockingQueue.take(ClusterEventBlockingQueue.java:85)
at org.apache.helix.controller.GenericHelixController$ClusterEventProcessor.run(GenericHelixController.java:594)
2018-04-09 09:27:20,582 INFO org.apache.helix.controller.GenericHelixController: END ClusterEventProcessor thread
2018-04-09 09:27:20,580 INFO org.mortbay.log: Stopped HttpServer2$SelectChannelConnectorWithSafeStartup@host.domain.net:6188
2018-04-09 09:27:20,585 WARN org.apache.hadoop.yarn.webapp.GenericExceptionHandler: INTERNAL_SERVER_ERROR
javax.ws.rs.WebApplicationException: org.apache.phoenix.exception.PhoenixIOException: Interrupted calling coprocessor service org.apache.phoenix.coprocessor.generated.MetaDataProtos$MetaDataService for row \x00\x00METRIC_RECORD
at org.apache.hadoop.yarn.server.applicationhistoryservice.webapp.TimelineWebServices.getTimelineMetrics(TimelineWebServices.java:377)
at sun.reflect.GeneratedMethodAccessor24.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$TypeOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:185)
at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:288)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1469)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1400)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1349)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1339)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:537)
at com.sun.jersey.spi.container.servlet.ServletContainer.doFilter(ServletContainer.java:895)
at com.sun.jersey.spi.container.servlet.ServletContainer.doFilter(ServletContainer.java:843)
at com.sun.jersey.spi.container.servlet.ServletContainer.doFilter(ServletContainer.java:804)
at com.google.inject.servlet.FilterDefinition.doFilter(FilterDefinition.java:163)
at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:58)
at com.google.inject.servlet.ManagedFilterPipeline.dispatch(ManagedFilterPipeline.java:118)
at com.google.inject.servlet.GuiceFilter.doFilter(GuiceFilter.java:113)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.apache.hadoop.security.http.XFrameOptionsFilter.doFilter(XFrameOptionsFilter.java:57)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.apache.hadoop.http.lib.StaticUserWebFilter$StaticUserFilter.doFilter(StaticUserWebFilter.java:109)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.apache.hadoop.http.HttpServer2$QuotingInputFilter.doFilter(HttpServer2.java:1426)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.apache.hadoop.http.NoCacheFilter.doFilter(NoCacheFilter.java:45)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:399)
at org.mortbay.jetty.security.SecurityHandler.handle(SecurityHandler.java:216)
at org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182)
at org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:766)
at org.mortbay.jetty.webapp.WebAppContext.handle(WebAppContext.java:450)
at org.mortbay.jetty.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:230)
at org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152)
at org.mortbay.jetty.Server.handle(Server.java:326)
at org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542)
at org.mortbay.jetty.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:928)
at org.mortbay.jetty.HttpParser.parseNext(HttpParser.java:549)
at org.mortbay.jetty.HttpParser.parseAvailable(HttpParser.java:212)
at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404)
at org.mortbay.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:410)
at org.mortbay.thread.QueuedThreadPool$PoolThread.run(QueuedThreadPool.java:582)
[org.mortbay.jetty.EofException]
at com.sun.jersey.core.provider.jaxb.AbstractRootElementProvider.writeTo(AbstractRootElementProvider.java:159)
at com.sun.jersey.spi.container.ContainerResponse.write(ContainerResponse.java:306)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1437)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1349)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1339)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:537)
at com.sun.jersey.spi.container.servlet.ServletContainer.doFilter(ServletContainer.java:895)
at com.sun.jersey.spi.container.servlet.ServletContainer.doFilter(ServletContainer.java:843)
at com.sun.jersey.spi.container.servlet.ServletContainer.doFilter(ServletContainer.java:804)
at com.google.inject.servlet.FilterDefinition.doFilter(FilterDefinition.java:163)
at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:58)
at com.google.inject.servlet.ManagedFilterPipeline.dispatch(ManagedFilterPipeline.java:118)
at com.google.inject.servlet.GuiceFilter.doFilter(GuiceFilter.java:113)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.apache.hadoop.security.http.XFrameOptionsFilter.doFilter(XFrameOptionsFilter.java:57)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.apache.hadoop.http.lib.StaticUserWebFilter$StaticUserFilter.doFilter(StaticUserWebFilter.java:109)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.apache.hadoop.http.HttpServer2$QuotingInputFilter.doFilter(HttpServer2.java:1426)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.apache.hadoop.http.NoCacheFilter.doFilter(NoCacheFilter.java:45)
at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
at org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:399)
at org.mortbay.jetty.security.SecurityHandler.handle(SecurityHandler.java:216)
at org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182)
at org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:766)
at org.mortbay.jetty.webapp.WebAppContext.handle(WebAppContext.java:450)
at org.mortbay.jetty.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:230)
at org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152)
at org.mortbay.jetty.Server.handle(Server.java:326)
at org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542)
at org.mortbay.jetty.HttpConnection$RequestHandler.content(HttpConnection.java:945)
at org.mortbay.jetty.HttpParser.parseNext(HttpParser.java:756)
at org.mortbay.jetty.HttpParser.parseAvailable(HttpParser.java:212)
at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404)
at org.mortbay.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:410)
at org.mortbay.thread.QueuedThreadPool$PoolThread.run(QueuedThreadPool.java:582)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[org.mortbay.jetty.EofException]
at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325)
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:95)
at com.sun.jersey.core.provider.jaxb.AbstractRootElementProvider.writeTo(AbstractRootElementProvider.java:179)
at com.sun.jersey.core.provider.jaxb.AbstractRootElementProvider.writeTo(AbstractRootElementProvider.java:157)
... 37 more
Caused by: org.mortbay.jetty.EofException
at org.mortbay.jetty.AbstractGenerator$Output.write(AbstractGenerator.java:634)
at org.mortbay.jetty.AbstractGenerator$Output.write(AbstractGenerator.java:580)
at com.sun.jersey.spi.container.servlet.WebComponent$Writer.write(WebComponent.java:307)
at com.sun.jersey.spi.container.ContainerResponse$CommittingOutputStream.write(ContainerResponse.java:134)
at com.sun.xml.bind.v2.runtime.output.UTF8XmlOutput.flushBuffer(UTF8XmlOutput.java:416)
at com.sun.xml.bind.v2.runtime.output.UTF8XmlOutput.endDocument(UTF8XmlOutput.java:141)
at com.sun.xml.bind.v2.runtime.XMLSerializer.endDocument(XMLSerializer.java:856)
at com.sun.xml.bind.v2.runtime.MarshallerImpl.postwrite(MarshallerImpl.java:374)
at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:321)
hbase-ams-master-host.domain.net.log
WARN [RpcServer.FifoWFPBQ.default.handler=27,queue=0,port=35935] io.FSDataInputStreamWrapper: Failed to invoke 'unbuffer' method in class class org.apache.hadoop.fs.FSDataInputStream . So there may be a TCP socket connection left open in CLOSE_WAIT state.
java.lang.reflect.InvocationTargetException
at sun.reflect.GeneratedMethodAccessor33.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.hbase.io.FSDataInputStreamWrapper.unbuffer(FSDataInputStreamWrapper.java:263)
at org.apache.hadoop.hbase.io.hfile.HFileBlock$FSReaderImpl.unbufferStream(HFileBlock.java:1788)
at org.apache.hadoop.hbase.io.hfile.HFileReaderV2.unbufferStream(HFileReaderV2.java:1403)
at org.apache.hadoop.hbase.io.hfile.AbstractHFileReader$Scanner.close(AbstractHFileReader.java:343)
at org.apache.hadoop.hbase.regionserver.StoreFileScanner.close(StoreFileScanner.java:252)
at org.apache.hadoop.hbase.regionserver.KeyValueHeap.close(KeyValueHeap.java:222)
at org.apache.hadoop.hbase.regionserver.StoreScanner.close(StoreScanner.java:449)
at org.apache.hadoop.hbase.regionserver.KeyValueHeap.close(KeyValueHeap.java:217)
at org.apache.hadoop.hbase.regionserver.HRegion$RegionScannerImpl.close(HRegion.java:6198)
at org.apache.phoenix.cache.aggcache.SpillableGroupByCache$2.close(SpillableGroupByCache.java:347)
at org.apache.phoenix.coprocessor.BaseScannerRegionObserver$1.close(BaseScannerRegionObserver.java:244)
at org.apache.hadoop.hbase.regionserver.RSRpcServices.closeScanner(RSRpcServices.java:2717)
at org.apache.hadoop.hbase.regionserver.RSRpcServices.scan(RSRpcServices.java:2674)
at org.apache.hadoop.hbase.protobuf.generated.ClientProtos$ClientService$2.callBlockingMethod(ClientProtos.java:32385)
at org.apache.hadoop.hbase.ipc.RpcServer.call(RpcServer.java:2150)
at org.apache.hadoop.hbase.ipc.CallRunner.run(CallRunner.java:112)
at org.apache.hadoop.hbase.ipc.RpcExecutor$Handler.run(RpcExecutor.java:187)
at org.apache.hadoop.hbase.ipc.RpcExecutor$Handler.run(RpcExecutor.java:167)
Caused by: java.lang.UnsupportedOperationException: this stream does not support unbuffering.
at org.apache.hadoop.fs.FSDataInputStream.unbuffer(FSDataInputStream.java:233)
I have all Metrics Collector configs with recommended values, I use embedded option for around 10 hosts.
Please suggest what to check.
