Cloudera Community

Support Questions

Find answers, ask questions, and share your expertise
cancel
Turn on suggestions
Auto-suggest helps you quickly narrow down your search results by suggesting possible matches as you type.
Showing results for 
Show  only  | Search instead for 
Did you mean: 
Advanced Search

CDS 2.3 release 2 Lineage File Missing Error

Labels:
avatar
author-rank Benassi10
Explorer

Created on ‎04-19-2018 11:16 AM - edited ‎09-16-2022 06:07 AM

I tried to upgrade Spark from 2.2 to 2.3 and got an error. It has something to do with the lineage file missing. So, the SparkContext could not be initialized. I rolled back to CDS 2.2 release 2. Does anyone have a way to fix this?

 

Thanks.

7,552 Views
1
10 REPLIES 10

avatar
author-rank lucas
New Contributor

Created ‎04-27-2018 09:17 AM

I get the same error as you. Did you solve this?

6,920 Views
0 Kudos

avatar
author-rank Benassi10
Explorer

Created ‎04-27-2018 09:19 AM

No, I haven't. So far, there has been no answers.
6,916 Views

avatar
author-rank AutoIN author-rank
Master Collaborator

Created ‎05-01-2018 07:22 PM

Thanks for reporting. Care to share the full error for the lineage file missing, please? I quickly tested an upgrade from 2.2 to 2.3 but didn't hit this. A full error stack trace would certainly help.

6,847 Views

avatar
author-rank Benassi10
Explorer

Created ‎05-01-2018 07:48 PM

Here is the full stack when I try to launch spark-shell.

 

18/05/02 02:47:37 ERROR spark.SparkContext: Error initializing SparkContext.
org.apache.spark.SparkException: Exception when registering SparkListener
	at org.apache.spark.SparkContext.setupAndStartListenerBus(SparkContext.scala:2364)
	at org.apache.spark.SparkContext.<init>(SparkContext.scala:553)
	at org.apache.spark.SparkContext$.getOrCreate(SparkContext.scala:2486)
	at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:930)
	at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:921)
	at scala.Option.getOrElse(Option.scala:121)
	at org.apache.spark.sql.SparkSession$Builder.getOrCreate(SparkSession.scala:921)
	at org.apache.spark.repl.Main$.createSparkSession(Main.scala:103)
	at $line3.$read$$iw$$iw.<init>(<console>:15)
	at $line3.$read$$iw.<init>(<console>:43)
	at $line3.$read.<init>(<console>:45)
	at $line3.$read$.<init>(<console>:49)
	at $line3.$read$.<clinit>(<console>)
	at $line3.$eval$.$print$lzycompute(<console>:7)
	at $line3.$eval$.$print(<console>:6)
	at $line3.$eval.$print(<console>)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:786)
	at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1047)
	at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:638)
	at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:637)
	at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31)
	at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19)
	at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:637)
	at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:569)
	at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:565)
	at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:807)
	at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:681)
	at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:395)
	at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1$$anonfun$apply$mcV$sp$1$$anonfun$apply$mcV$sp$2.apply(SparkILoop.scala:79)
	at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1$$anonfun$apply$mcV$sp$1$$anonfun$apply$mcV$sp$2.apply(SparkILoop.scala:79)
	at scala.collection.immutable.List.foreach(List.scala:381)
	at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1$$anonfun$apply$mcV$sp$1.apply$mcV$sp(SparkILoop.scala:79)
	at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1$$anonfun$apply$mcV$sp$1.apply(SparkILoop.scala:79)
	at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1$$anonfun$apply$mcV$sp$1.apply(SparkILoop.scala:79)
	at scala.tools.nsc.interpreter.ILoop.savingReplayStack(ILoop.scala:91)
	at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply$mcV$sp(SparkILoop.scala:78)
	at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply(SparkILoop.scala:78)
	at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply(SparkILoop.scala:78)
	at scala.tools.nsc.interpreter.IMain.beQuietDuring(IMain.scala:214)
	at org.apache.spark.repl.SparkILoop.initializeSpark(SparkILoop.scala:77)
	at org.apache.spark.repl.SparkILoop.loadFiles(SparkILoop.scala:110)
	at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920)
	at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:909)
	at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:909)
	at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97)
	at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:909)
	at org.apache.spark.repl.Main$.doMain(Main.scala:76)
	at org.apache.spark.repl.Main$.main(Main.scala:56)
	at org.apache.spark.repl.Main.main(Main.scala)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
	at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:892)
	at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:197)
	at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:227)
	at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:136)
	at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.io.FileNotFoundException: Lineage directory /var/log/spark2/lineage doesn't exist or is not writable.
	at com.cloudera.spark.lineage.LineageWriter$.checkLineageConfig(LineageWriter.scala:158)
	at com.cloudera.spark.lineage.NavigatorAppListener.<init>(ClouderaNavigatorListener.scala:30)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
	at org.apache.spark.util.Utils$$anonfun$loadExtensions$1.apply(Utils.scala:2740)
	at org.apache.spark.util.Utils$$anonfun$loadExtensions$1.apply(Utils.scala:2732)
	at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
	at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
	at scala.collection.mutable.ArraySeq.foreach(ArraySeq.scala:74)
	at scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:241)
	at scala.collection.AbstractTraversable.flatMap(Traversable.scala:104)
	at org.apache.spark.util.Utils$.loadExtensions(Utils.scala:2732)
	at org.apache.spark.SparkContext$$anonfun$setupAndStartListenerBus$1.apply(SparkContext.scala:2353)
	at org.apache.spark.SparkContext$$anonfun$setupAndStartListenerBus$1.apply(SparkContext.scala:2352)
	at scala.Option.foreach(Option.scala:257)
	at org.apache.spark.SparkContext.setupAndStartListenerBus(SparkContext.scala:2352)
	... 62 more
org.apache.spark.SparkException: Exception when registering SparkListener
  at org.apache.spark.SparkContext.setupAndStartListenerBus(SparkContext.scala:2364)
  at org.apache.spark.SparkContext.<init>(SparkContext.scala:553)
  at org.apache.spark.SparkContext$.getOrCreate(SparkContext.scala:2486)
  at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:930)
  at org.apache.spark.sql.SparkSession$Builder$$anonfun$7.apply(SparkSession.scala:921)
  at scala.Option.getOrElse(Option.scala:121)
  at org.apache.spark.sql.SparkSession$Builder.getOrCreate(SparkSession.scala:921)
  at org.apache.spark.repl.Main$.createSparkSession(Main.scala:103)
  ... 55 elided
Caused by: java.io.FileNotFoundException: Lineage directory /var/log/spark2/lineage doesn't exist or is not writable.
  at com.cloudera.spark.lineage.LineageWriter$.checkLineageConfig(LineageWriter.scala:158)
  at com.cloudera.spark.lineage.NavigatorAppListener.<init>(ClouderaNavigatorListener.scala:30)
  at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
  at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
  at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
  at org.apache.spark.util.Utils$$anonfun$loadExtensions$1.apply(Utils.scala:2740)
  at org.apache.spark.util.Utils$$anonfun$loadExtensions$1.apply(Utils.scala:2732)
  at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
  at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
  at scala.collection.mutable.ArraySeq.foreach(ArraySeq.scala:74)
  at scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:241)
  at scala.collection.AbstractTraversable.flatMap(Traversable.scala:104)
  at org.apache.spark.util.Utils$.loadExtensions(Utils.scala:2732)
  at org.apache.spark.SparkContext$$anonfun$setupAndStartListenerBus$1.apply(SparkContext.scala:2353)
  at org.apache.spark.SparkContext$$anonfun$setupAndStartListenerBus$1.apply(SparkContext.scala:2352)
  at scala.Option.foreach(Option.scala:257)
  at org.apache.spark.SparkContext.setupAndStartListenerBus(SparkContext.scala:2352)
  ... 62 more

Hope this helps.

 

Cheers,

Ben

6,839 Views
0 Kudos

avatar
author-rank AutoIN author-rank
Master Collaborator

Created ‎05-01-2018 11:54 PM

Thanks @Benassi10 for providing the context. Much appreciated.

 

We are discussing this internally to see what can cause such issues. One theory is that we enabled support for Spark Lineage in CDS 2.3 and if the cm-agent doesn't create /var/log/spar2/lineage directory (for some reasons) you can see this behaviour. If lineage is not important, can you try running the shell with lineage disabled?

 

spark2-shell  --conf spark.lineage.enabled=false

 

If you don't want to disable lineage, another workaround would be to change the lineage directory to /tmp  in CM > Spark2 > Configuration > GATEWAY Lineage Log Directory > /tmp , followed by redeploying the client configuration.

 

Let us know if the above helps. I will update the thread once I have more information on the fix.

6,821 Views

avatar
author-rank lucas
New Contributor

Created ‎05-02-2018 07:20 AM

After I changed the directory to / tmp, I verified that spark 2.3 works normally.

 

Is there any possibility of a new release of Spark 2.3?

6,790 Views
0 Kudos

avatar
author-rank AutoIN author-rank
Master Collaborator

Created ‎05-02-2018 07:32 AM

Thanks, Lucas. That's great to hear!

Can you please check if toggling it back to  /var/log/spark2/lineage followed by redeploying the client configuration helps too?

 

As promised, once the fix is identified I will update this thread. 

6,787 Views

avatar
author-rank Benassi10
Explorer

Created on ‎05-02-2018 08:47 AM - edited ‎05-02-2018 09:03 AM

I got it to work too by changing the directory to /tmp, but when I changed it back to /var/log/spark2/lineage, the error came back. So, I created the directory manually. I modified the spark2 and lineage directories to be owned by spark:spark and modified the lineage directory to be writeable by all (rwxrwxrwx) with a sticky bit (t). After doing this, the error goes away.  

6,768 Views

avatar
author-rank AutoIN author-rank
Master Collaborator

Created ‎05-02-2018 08:18 PM

Cool. I will feed it back in the internal Jira we are discussing this issue for.

Thx for sharing.

6,734 Views
Announcements
What's New @ Cloudera
Cloudera Data Engineering 1.23: Access Spark from Your Favor...
What's New @ Cloudera
HBase REST server scaling support is Generally Available
What's New @ Cloudera
New CLI option in the update-database command
What's New @ Cloudera
New Action menu item in the Cloudera Operational Database UI
What's New @ Cloudera
Get the list of supported instance types in the Cloudera Ope...
View More Announcements