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Exception in thread "pool-9-thread-1" java.lang.OutOfMemoryError: GC overhead limit exceeded

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Exception in thread "pool-9-thread-1" java.lang.OutOfMemoryError: GC overhead limit exceeded

Expert Contributor

I am trying to distcp hdfs data to s3 and get this error:

how do I fix it and why does it say Failed to close file?

Exception in thread "pool-9-thread-1" java.lang.OutOfMemoryError: GC overhead limit exceededat java.util.Arrays.copyOf(Arrays.java:2367)at java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:130)at java.lang.AbstractStringBuilder.ensureCapacityInternal(AbstractStringBuilder.java:114)at java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:415)at java.lang.StringBuffer.append(StringBuffer.java:237)at java.net.URI.appendSchemeSpecificPart(URI.java:1892)at java.net.URI.toString(URI.java:1922)at java.net.URI.<init>(URI.java:749)at org.apache.hadoop.fs.Path.<init>(Path.java:109)at org.apache.hadoop.fs.Path.<init>(Path.java:94)at org.apache.hadoop.hdfs.protocol.HdfsFileStatus.getFullPath(HdfsFileStatus.java:230)at org.apache.hadoop.hdfs.protocol.HdfsFileStatus.makeQualified(HdfsFileStatus.java:263)at org.apache.hadoop.hdfs.DistributedFileSystem.listStatusInternal(DistributedFileSystem.java:772)at org.apache.hadoop.hdfs.DistributedFileSystem.access$600(DistributedFileSystem.java:110)at org.apache.hadoop.hdfs.DistributedFileSystem$16.doCall(DistributedFileSystem.java:796)at org.apache.hadoop.hdfs.DistributedFileSystem$16.doCall(DistributedFileSystem.java:792)at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)at org.apache.hadoop.hdfs.DistributedFileSystem.listStatus(DistributedFileSystem.java:792)at org.apache.hadoop.tools.SimpleCopyListing$FileStatusProcessor.getFileStatus(SimpleCopyListing.java:444)at org.apache.hadoop.tools.SimpleCopyListing$FileStatusProcessor.processItem(SimpleCopyListing.java:485)at org.apache.hadoop.tools.util.ProducerConsumer$Worker.run(ProducerConsumer.java:189)at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)at java.lang.Thread.run(Thread.java:745)^C18/04/19 14:57:27 ERROR hdfs.DFSClient: Failed to close inode 66296599org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.hdfs.server.namenode.LeaseExpiredException): No lease on /user/centos/.staging/_distcp-940500037/fileList.seq (inode 66296599): File does not exist. Holder DFSClient_NONMAPREDUCE_186544109_1 does not have any open files.at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:3663)at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFileInternal(FSNamesystem.java:3750)at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFile(FSNamesystem.java:3720)at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.complete(NameNodeRpcServer.java:745)at org.apache.hadoop.hdfs.server.namenode.AuthorizationProviderProxyClientProtocol.complete(AuthorizationProviderProxyClientProtocol.java:245)at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.complete(ClientNamenodeProtocolServerSideTranslatorPB.java:540)at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:617)at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1073)at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2216)at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2212)at java.security.AccessController.doPrivileged(Native Method)at javax.security.auth.Subject.doAs(Subject.java:415)at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1920)at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2210)at org.apache.hadoop.ipc.Client.call(Client.java:1472)at org.apache.hadoop.ipc.Client.call(Client.java:1409)at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:230)at com.sun.proxy.$Proxy23.complete(Unknown Source)at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.complete(ClientNamenodeProtocolTranslatorPB.java:457)at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)at java.lang.reflect.Method.invoke(Method.java:606)at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:256)at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:104)at com.sun.proxy.$Proxy24.complete(Unknown Source)at org.apache.hadoop.hdfs.DFSOutputStream.completeFile(DFSOutputStream.java:2690)at org.apache.hadoop.hdfs.DFSOutputStream.closeImpl(DFSOutputStream.java:2667)at org.apache.hadoop.hdfs.DFSOutputStream.close(DFSOutputStream.java:2621)at org.apache.hadoop.hdfs.DFSClient.closeAllFilesBeingWritten(DFSClient.java:987)at org.apache.hadoop.hdfs.DFSClient.closeOutputStreams(DFSClient.java:1019)at org.apache.hadoop.hdfs.DistributedFileSystem.close(DistributedFileSystem.java:1022)at org.apache.hadoop.fs.FileSystem$Cache.closeAll(FileSystem.java:2897)at org.apache.hadoop.fs.FileSystem$Cache$ClientFinalizer.run(FileSystem.java:2914)at org.apache.hadoop.util.ShutdownHookManager$1.run(ShutdownHookManager.java:54)
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