So with some digging I found out how to do this in Hue, it is very easy under the Settings tab when executing a query, just enter the key=mapred.job.queue.name & value = poolname.
It looks like Hue has an interface for this in the Pig editor as well under Hadoop Properties.
From Beeline you can do this like this:
beeline -u jdbc:hive2://[HIVESERVER2HOST]:[PORT]/[DBNAME] -e "[SELECT QUERY];" --hiveconf mapred.job.queue.name=[POOLNAME]
And in Pig the set mapred.job.queue.name [poolname] command can be used.
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