The sequence table information is not complete error when adding a component or kerberos.

[#1]

Hello,

When trying to add a component or to kerberize the cluster ambari hangs and shows the following error in ambari-server.log

07 Feb 2017 17:01:17,618 ERROR [ambari-client-thread-33] ContainerResponse:419 - The RuntimeException could not be mapped to a response, re-throwing to the HTTP container
Local Exception Stack:
Exception [EclipseLink-4011] (Eclipse Persistence Services - 2.6.2.v20151217-774c696): org.eclipse.persistence.exceptions.DatabaseException
Exception Description: Error preallocating sequence numbers.  The sequence table information is not complete.
        at org.eclipse.persistence.exceptions.DatabaseException.errorPreallocatingSequenceNumbers(DatabaseException.java:150)
        at org.eclipse.persistence.sequencing.StandardSequence.getGeneratedVector(StandardSequence.java:73)
        at org.eclipse.persistence.sequencing.Sequence.getGeneratedVector(Sequence.java:257)
        at org.eclipse.persistence.internal.sequencing.SequencingManager$Preallocation_Transaction_NoAccessor_State.getNextValue(SequencingManager.java:485)
        at org.eclipse.persistence.internal.sequencing.SequencingManager.getNextValue(SequencingManager.java:1107)
        at org.eclipse.persistence.internal.sequencing.ClientSessionSequencing.getNextValue(ClientSessionSequencing.java:70)
        at org.eclipse.persistence.internal.descriptors.ObjectBuilder.assignSequenceNumber(ObjectBuilder.java:362)
        at org.eclipse.persistence.internal.descriptors.ObjectBuilder.assignSequenceNumber(ObjectBuilder.java:321)
        at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.assignSequenceNumber(UnitOfWorkImpl.java:486)
        at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.registerNotRegisteredNewObjectForPersist(UnitOfWorkImpl.java:4288)
        at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.registerNotRegisteredNewObjectForPersist(RepeatableWriteUnitOfWork.java:521)
        at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.registerNewObjectForPersist(UnitOfWorkImpl.java:4233)
        at org.eclipse.persistence.internal.jpa.EntityManagerImpl.persist(EntityManagerImpl.java:507)
        at org.apache.ambari.server.orm.dao.ServiceComponentDesiredStateDAO.create(ServiceComponentDesiredStateDAO.java:110)
        at org.apache.ambari.server.orm.AmbariJpaLocalTxnInterceptor.invoke(AmbariJpaLocalTxnInterceptor.java:118)
        at org.apache.ambari.server.state.ServiceComponentImpl.persistEntities(ServiceComponentImpl.java:628)
        at org.apache.ambari.server.orm.AmbariJpaLocalTxnInterceptor.invoke(AmbariJpaLocalTxnInterceptor.java:128)
        at org.apache.ambari.server.state.ServiceComponentImpl.persist(ServiceComponentImpl.java:596)
        at org.apache.ambari.server.controller.internal.ComponentResourceProvider.createComponents(ComponentResourceProvider.java:382)
        at org.apache.ambari.server.controller.internal.ComponentResourceProvider$1.invoke(ComponentResourceProvider.java:144)
        at org.apache.ambari.server.controller.internal.ComponentResourceProvider$1.invoke(ComponentResourceProvider.java:141)
        at org.apache.ambari.server.controller.internal.AbstractResourceProvider.invokeWithRetry(AbstractResourceProvider.java:455)
        at org.apache.ambari.server.controller.internal.AbstractResourceProvider.createResources(AbstractResourceProvider.java:278)
        at org.apache.ambari.server.controller.internal.ComponentResourceProvider.createResourcesAuthorized(ComponentResourceProvider.java:141)
        at org.apache.ambari.server.controller.internal.AbstractAuthorizedResourceProvider.createResources(AbstractAuthorizedResourceProvider.java:220)
        at org.apache.ambari.server.controller.internal.ClusterControllerImpl.createResources(ClusterControllerImpl.java:298)
        at org.apache.ambari.server.api.services.persistence.PersistenceManagerImpl.create(PersistenceManagerImpl.java:97)
        at org.apache.ambari.server.api.handlers.QueryCreateHandler.persist(QueryCreateHandler.java:170)
        at org.apache.ambari.server.api.handlers.QueryCreateHandler.handleRequest(QueryCreateHandler.java:75)
        at org.apache.ambari.server.api.services.BaseRequest.process(BaseRequest.java:145)
        at org.apache.ambari.server.api.services.BaseService.handleRequest(BaseService.java:126)
        at org.apache.ambari.server.api.services.BaseService.handleRequest(BaseService.java:90)
        at org.apache.ambari.server.api.services.ServiceService.createServices(ServiceService.java:124)
        at sun.reflect.GeneratedMethodAccessor469.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:497)
        at com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
        at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:205)
        at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
        at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
        at com.sun.jersey.server.impl.uri.rules.SubLocatorRule.accept(SubLocatorRule.java:137)
        at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
        at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
        at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
        at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
        at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1542)
        at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1473)
        at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1419)
        at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1409)
        at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:409)
        at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:558)
        at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:733)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:848)
        at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:684)
        at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1507)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
        at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:118)
        at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:84)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.apache.ambari.server.security.authorization.AmbariAuthorizationFilter.doFilter(AmbariAuthorizationFilter.java:257)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:103)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.apache.ambari.server.security.authorization.jwt.JwtAuthenticationFilter.doFilter(JwtAuthenticationFilter.java:96)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:150)
        at org.apache.ambari.server.security.authentication.AmbariAuthenticationFilter.doFilter(AmbariAuthenticationFilter.java:88)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.apache.ambari.server.security.authorization.AmbariUserAuthorizationFilter.doFilter(AmbariUserAuthorizationFilter.java:91)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
        at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
        at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:192)
        at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:160)
        at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
        at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
        at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1478)
        at org.apache.ambari.server.api.MethodOverrideFilter.doFilter(MethodOverrideFilter.java:72)
        at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1478)
        at org.apache.ambari.server.api.AmbariPersistFilter.doFilter(AmbariPersistFilter.java:47)
        at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1478)
        at org.apache.ambari.server.security.AbstractSecurityHeaderFilter.doFilter(AbstractSecurityHeaderFilter.java:109)
        at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1478)
        at org.eclipse.jetty.servlets.UserAgentFilter.doFilter(UserAgentFilter.java:82)
        at org.eclipse.jetty.servlets.GzipFilter.doFilter(GzipFilter.java:294)
        at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1478)
        at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:499)
        at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
        at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557)
        at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
        at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086)
        at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:427)
        at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)
        at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020)
        at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)
        at org.apache.ambari.server.controller.AmbariHandlerList.processHandlers(AmbariHandlerList.java:212)
        at org.apache.ambari.server.controller.AmbariHandlerList.processHandlers(AmbariHandlerList.java:201)
        at org.apache.ambari.server.controller.AmbariHandlerList.handle(AmbariHandlerList.java:139)
        at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
        at org.eclipse.jetty.server.Server.handle(Server.java:370)
        at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:494)
        at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:984)
        at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1045)
        at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:861)
        at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:236)
        at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82)
        at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:696)
        at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:53)
        at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608)
        at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543)
        at java.lang.Thread.run(Thread.java:745)
07 Feb 2017 17:01:17,620  WARN [ambari-client-thread-33] ServletHandler:561 - Error Processing URI: /api/v1/clusters/test/services - (org.eclipse.persistence.exceptions.DatabaseException)
Exception Description: Error preallocating sequence numbers.  The sequence table information is not complete.
07 Feb 2017 17:01:17,620  WARN [ambari-client-thread-33] ServletHandler:561 - Error Processing URI: /api/v1/clusters/test/services - (org.eclipse.persistence.exceptions.DatabaseException)

This is happening since I installed grafana following the documentation instructions.

I tried to install ranger with ambari but I couldn't and I had to use the same method that with grafana to do this. But now I'm trying to kerberize the cluster and there is no way to do it.

I started using ambari 2.2 and upgraded to 2.4.1 before this error started.

I use Mysql as Database.

Any clue of how to solve this?

Thank you in advance

[#2 · Accepted solution]

@Juan Manuel Nieto

It is possible that you might be missing servicecomponentdesiredstate_id_seq sequence in ambari-sequences table.

1. first check if is it exist.

select * from ambari_sequences where sequence_name = 'servicecomponentdesiredstate_id_seq'

2. If not find out the current max id and then update it

select max(id) from servicecomponentdesiredstate

3. Now update/insert the max(id) in ambari_sequences table.

INSERT INTO ambari790.ambari_sequences (sequence_name, sequence_value) VALUES ('servicecomponentdesiredstate_id_seq', MAXID) //Here MAXID is the output from 2nd query.

[#3]

It worked!

The servicecomponentdesiredstate_id_seq was missing.

Thank you very much!