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Title | Views | Posted |
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1064 | 03-20-2023 12:04 AM |
03-20-2023
12:04 AM
Solved R_HOME was not setup properly, I set the environment variable to /usr/local/lib/R and that solved the problem.
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03-16-2023
11:32 PM
Hi, I am getting the following error on Importing R globalenv module with Python3, other modules are importing fine. Error comes on following modules: from rpy2.robjects import globalenv import rpy2.robjects as robjects from rpy2.robjects.packages import importr from rpy2.robjects import pandas2ri import os for key in os.environ:
if key in ['R_LIBS', 'LD_LIBRARY_PATH', 'R_HOME']:
print(key, '=>', os.environ[key]) LD_LIBRARY_PATH => /data/cloudera/parcels/CDH-7.1.7-1.cdh7.1.7.p78.21656418/lib/hadoop/lib/native:/data/cloudera/parcels/PTY_BDP-7.2.0.26_CDP7.p0/jpeplite/lib/*:/data/cloudera/parcels/PTY_BDP-7.2.0.26_CDP7.p0/pepspark/lib/*:/data/cloudera/parcels/PTY_BDP-7.2.0.26_CDP7.p0/pephive/lib/*:/usr/lib/x86_64-linux-gnu/:/usr/local/lib/R/lib/
R_LIBS => /usr/lib/x86_64-linux-gnu/:/usr/local/lib/R/lib/:/home/cdsw/R:/usr/local/lib/R/library
R_HOME => /usr/local/bin/R import rpy2 from rpy2 import situation from rpy2.robjects import globalenv Engine exited with status 2. Configurations used: These Environment variables are important cannot change that, I have tried running the code from CDSW sessions and even through python shell of my docker container that works fine. I cannot find any documentation regarding this particular error. There is another solved question on the community: Workbench-exits-every-time-lm-fit-command-is-run-in-python-2/td-p/60758 My job Engine is : Base Image v15 , docker repository engine:15 Don't have Admin rights so reinstalling R and other stuff is not possible. Any leads are helpful Thanks
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