I got the same problem when I put the Java files in my home directory. It only worked after I put the Java files in the /usr/java directory.
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This issue was corrected by using the sqlite3 command line interface and (alter table search_collection add column owner_id int NULL) No issues were seen after that.
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This issue was resolved by removing the 5.3.6 libraries from the cluster. It seems that Cloudera leaves the old libraries in the path after the new libraries are installed.
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