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04-25-2018
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05-03-2018
03:05 PM
Perfect! Thank you Chris, definitely solved. I thought I had caused it, but obviously based on this fix the spark2.3.0 parcel is just incomplete.
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05-03-2018
03:03 PM
Hiya, yes it was spark2-shell. The answer ChrisV has given is the fix, I'm so surprised the spark2.3.0 parcel didn't have this included!
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04-25-2018
01:23 PM
This seems like a really simple case of wrong classpaths, and the wrong version of snappy being brought in, but I can't work out how/why! I have an upgraded CDH5.14.2 (upgraded from 5.13.2), spark2.3.0(upgraded from 2.2.0 cloudera2, including the csd) I do the following in a spark2-shell; val df = spark.read.parquet("/inputdata/parquet/parquet*snappy*") scala> df.show And then just get the following error.... Any ideas how to debug/fix? I did all this on an offline platform, but have now replicated on a fresh online install. Help! WARN scheduler.TaskSetManager: Lost task 0.0 in stage 3.0 (TID 4, fozzy, executor 1): java.lang.UnsatisfiedLinkError: org.xerial.snappy.SnappyNative.uncompressedLength(Ljava/nio/ByteBuffer;II)I at org.xerial.snappy.SnappyNative.uncompressedLength(Native Method) at org.xerial.snappy.Snappy.uncompressedLength(Snappy.java:561) at parquet.hadoop.codec.SnappyDecompressor.decompress(SnappyDecompressor.java:62) at parquet.hadoop.codec.NonBlockedDecompressorStream.read(NonBlockedDecompressorStream.java:51) at java.io.DataInputStream.readFully(DataInputStream.java:195) at java.io.DataInputStream.readFully(DataInputStream.java:169) at parquet.bytes.BytesInput$StreamBytesInput.toByteArray(BytesInput.java:204) at parquet.column.values.dictionary.PlainValuesDictionary$PlainIntegerDictionary.<init>(PlainValuesDictionary.java:237) at parquet.column.Encoding$1.initDictionary(Encoding.java:100) at parquet.column.Encoding$4.initDictionary(Encoding.java:149) at org.apache.spark.sql.execution.datasources.parquet.VectorizedColumnReader.<init>(VectorizedColumnReader.java:114) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.checkEndOfRowGroup(VectorizedParquetRecordReader.java:312) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextBatch(VectorizedParquetRecordReader.java:258) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextKeyValue(VectorizedParquetRecordReader.java:161) at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:106) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:182) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:106) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.scan_nextBatch$(Unknown Source) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source) at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43) at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$10$$anon$1.hasNext(WholeStageCodegenExec.scala:614) at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:253) at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:247) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:830) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:830) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) at org.apache.spark.scheduler.Task.run(Task.scala:109) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 18/04/25 21:11:12 ERROR scheduler.TaskSetManager: Task 0 in stage 3.0 failed 4 times; aborting job org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 3.0 failed 4 times, most recent failure: Lost task 0.3 in stage 3.0 (TID 7, fozzy, executor 1): java.lang.UnsatisfiedLinkError: org.xerial.snappy.SnappyNative.uncompressedLength(Ljava/nio/ByteBuffer;II)I at org.xerial.snappy.SnappyNative.uncompressedLength(Native Method) at org.xerial.snappy.Snappy.uncompressedLength(Snappy.java:561) at parquet.hadoop.codec.SnappyDecompressor.decompress(SnappyDecompressor.java:62) at parquet.hadoop.codec.NonBlockedDecompressorStream.read(NonBlockedDecompressorStream.java:51) at java.io.DataInputStream.readFully(DataInputStream.java:195) at java.io.DataInputStream.readFully(DataInputStream.java:169) at parquet.bytes.BytesInput$StreamBytesInput.toByteArray(BytesInput.java:204) at parquet.column.values.dictionary.PlainValuesDictionary$PlainIntegerDictionary.<init>(PlainValuesDictionary.java:237) at parquet.column.Encoding$1.initDictionary(Encoding.java:100) at parquet.column.Encoding$4.initDictionary(Encoding.java:149) at org.apache.spark.sql.execution.datasources.parquet.VectorizedColumnReader.<init>(VectorizedColumnReader.java:114) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.checkEndOfRowGroup(VectorizedParquetRecordReader.java:312) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextBatch(VectorizedParquetRecordReader.java:258) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextKeyValue(VectorizedParquetRecordReader.java:161) at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:106) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:182) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:106) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.scan_nextBatch$(Unknown Source) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source) at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43) at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$10$$anon$1.hasNext(WholeStageCodegenExec.scala:614) at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:253) at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:247) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:830) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:830) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) at org.apache.spark.scheduler.Task.run(Task.scala:109) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Driver stacktrace: at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1599) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1587) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1586) at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1586) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831) at scala.Option.foreach(Option.scala:257) at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1820) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1769) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1758) at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48) at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2027) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2048) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2067) at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:363) at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38) at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3272) at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2484) at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2484) at org.apache.spark.sql.Dataset$$anonfun$52.apply(Dataset.scala:3253) at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77) at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3252) at org.apache.spark.sql.Dataset.head(Dataset.scala:2484) at org.apache.spark.sql.Dataset.take(Dataset.scala:2698) at org.apache.spark.sql.Dataset.showString(Dataset.scala:254) at org.apache.spark.sql.Dataset.show(Dataset.scala:723) at org.apache.spark.sql.Dataset.show(Dataset.scala:682) at org.apache.spark.sql.Dataset.show(Dataset.scala:691) ... 49 elided Caused by: java.lang.UnsatisfiedLinkError: org.xerial.snappy.SnappyNative.uncompressedLength(Ljava/nio/ByteBuffer;II)I at org.xerial.snappy.SnappyNative.uncompressedLength(Native Method) at org.xerial.snappy.Snappy.uncompressedLength(Snappy.java:561) at parquet.hadoop.codec.SnappyDecompressor.decompress(SnappyDecompressor.java:62) at parquet.hadoop.codec.NonBlockedDecompressorStream.read(NonBlockedDecompressorStream.java:51) at java.io.DataInputStream.readFully(DataInputStream.java:195) at java.io.DataInputStream.readFully(DataInputStream.java:169) at parquet.bytes.BytesInput$StreamBytesInput.toByteArray(BytesInput.java:204) at parquet.column.values.dictionary.PlainValuesDictionary$PlainIntegerDictionary.<init>(PlainValuesDictionary.java:237) at parquet.column.Encoding$1.initDictionary(Encoding.java:100) at parquet.column.Encoding$4.initDictionary(Encoding.java:149) at org.apache.spark.sql.execution.datasources.parquet.VectorizedColumnReader.<init>(VectorizedColumnReader.java:114) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.checkEndOfRowGroup(VectorizedParquetRecordReader.java:312) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextBatch(VectorizedParquetRecordReader.java:258) at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextKeyValue(VectorizedParquetRecordReader.java:161) at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:106) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:182) at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:106) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.scan_nextBatch$(Unknown Source) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source) at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43) at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$10$$anon$1.hasNext(WholeStageCodegenExec.scala:614) at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:253) at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:247) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:830) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:830) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) at org.apache.spark.scheduler.Task.run(Task.scala:109) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748)
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